Publications

35Reconstructing physiological oxygen gradients reveals the role of hypoxia in colon epithelial organization
Jiaquan Yu, Chuyi Chen, Felicia H. Rodriguez, Gianfranco L. Yee, Isabella Y. Zeng, Kevin Yang, Elizabeth K. Benitez, Karuna Ganesh, Scott R. Manalis

Available at: bioRxiv
34Scavenger submerged microfluidics for chemostatic organoid culture with physiologically relevant oxygen profiles
J Yu, C Chen, FH Rodriguez, GL Yee, IY Zeng, K Yang, EK Benitez, K Ganesh, SR Manalis

Submitted
33Inertial sensing of water content in tumor spheroids
G Katsikis, JC Yoon, TR Usherwood, S Malinowski, J Yu, C Chen, S Son, JL Sutton, KL Ligon, J Lee, TP Miettinen, SR Manalis

Available at: bioRxiv
32Acoustic tweezers for advancing precision biology and medicine
Shujie Yang, Joseph Rufo, Ying Chen, Chuyi Chen, Bruce W Drinkwater, Luke P Lee, Tony Jun Huang

Nature Reviews Methods Primers 5 (1), 49
Available at: https://www.nature.com/articles/s43586-025-00415-w
31Acoustofluidic spin control for 3D particle manipulation in droplets
Chuyi Chen, Yuyang Gu, Joseph Rufo, Jinxin Zhang, Kaichun Yang, Ying Chen, Luke P Lee, Tony Jun Huang

Science Advances 11 (20), eadx0269
Available at: https://www.science.org/doi/full/10.1126/sciadv.adx0269
30Joint subarray acoustic tweezers enable controllable cell translation, rotation, and deformation
Liang Shen, Zhenhua Tian, Kaichun Yang, Joseph Rich, Jianping Xia, Neil Upreti, Jinxin Zhang, Chuyi Chen, Nanjing Hao, Zhichao Pei, Tony Jun Huang

Nature Communications 15 (1), 9059
Available at: https://www.nature.com/articles/s41467-024-52686-8
29Acoustofluidic virus isolation via bessel beam excitation separation technology
Jianping Xia, Zeyu Wang, Ryan Becker, Feng Li, Fang Wei, Shujie Yang, Joseph Rich, Ke Li, Joseph Rufo, Jiao Qian, Kaichun Yang, Chuyi Chen, Yuyang Gu, Ruoyu Zhong, Patty J Lee, David TW Wong, Luke P Lee, Tony Jun Huang

ACS nano 18 (33), 22596-22607
Available at: https://pubs.acs.org/doi/abs/10.1021/acsnano.4c09692
28Acousto-dielectric tweezers enable independent manipulation of multiple particles
Liang Shen, Zhenhua Tian, Kaichun Yang, Joseph Rich, Jinxin Zhang, Jianping Xia, Wesley Collyer, Brandon Lu, Nanjing Hao, Zhichao Pei, Chuyi Chen, Tony Jun Huang

Science advances 10 (32), 2024
Available at: https://www.science.org/doi/abs/10.1126/sciadv.ado8992
27High-yield and rapid isolation of extracellular vesicles by flocculation via orbital acoustic trapping: FLOAT
J Rufo, P Zhang, Z Wang, Y Gu, K Yang, J Rich, C Chen, R Zhong, K Jin, Y He, J Xia, K Li, J Wu, Y Ouyang…

Microsystems & Nanoengineering 10 (1), 23, 2024
Available at: https://www.nature.com/articles/s41378-023-00648-3.pdf
26A solution to the biophysical fractionation of extracellular vesicles: Acoustic Nanoscale Separation via Wave-pillar Excitation Resonance (ANSWER)
J Zhang, C Chen, R Becker, J Rufo, S Yang, J Mai, P Zhang, Y Gu, Z Wang, Z Ma, J Xia, N Hao, Z Tian…

Science Advances 8 (47), eade0640, 2022
Available at: https://www.science.org/doi/full/10.1126/sciadv.ade0640
25
Harmonic acoustics for dynamic and selective particle manipulation
S Yang, Z Tian, Z Wang, J Rufo, P Li, J Mai, J Xia, H Bachman, PH Huang, M Wu, C Chen, LP Lee, TJ Huang

Nature materials 21 (5), 540-546, 2022
Available at: https://pmc.ncbi.nlm.nih.gov/articles/PMC9200603/
24Acoustofluidics for simultaneous nanoparticle-based drug loading and exosome encapsulation
Z Wang, J Rich, N Hao, Y Gu, C Chen, S Yang, P Zhang, TJ Huang

Microsystems & Nanoengineering 8 (1), 45, 2022
Available at: https://www.nature.com/articles/s41378-022-00374-2
23Acoustoelectronic nanotweezers enable dynamic and large-scale control of nanomaterials
P Zhang, J Rufo, C Chen, J Xia, Z Tian, L Zhang, N Hao, Z Zhong, Y Gu, K Chakrabarty, TJ Huang

Nature communications 12 (1), 3844, 2021
Available at: https://www.nature.com/articles/s41467-021-24101-z
22Acoustofluidic rotational tweezing enables high-speed contactless morphological phenotyping of zebrafish larvae
C Chen, Y Gu, J Philippe, P Zhang, H Bachman, J Zhang, J Mai, J Rufo, JF Rawls, EE Davis, N Katsanis…

Nature communications 12 (1), 1118, 2021
Available at: https://www.nature.com/articles/s41467-021-21373-3
21Fabrication of tunable, high-molecular-weight polymeric nanoparticles via ultrafast acoustofluidic micromixing
S Zhao, PH Huang, H Zhang, J Rich, H Bachman, J Ye, W Zhang, C Chen, Z Xie, Z Tian, P Kang, H Fu…

Lab on a Chip 21 (12), 2453-2463, 2021
Available at: https://pmc.ncbi.nlm.nih.gov/articles/PMC8213440/
20Acoustofluidic centrifuge for nanoparticle enrichment and separation
Y Gu, C Chen, Z Mao, H Bachman, R Becker, J Rufo, Z Wang, P Zhang, J Mai, S Yang, J Zhang, S Zhao…

Science advances 7 (1), eabc0467, 2021
Available at: https://www.science.org/doi/full/10.1126/sciadv.abc0467
19Acoustofluidic holography for micro-to nanoscale particle manipulation
Y Gu, C Chen, J Rufo, C Shen, Z Wang, PH Huang, H Fu, P Zhang, SA Cummer, Z Tian, TJ Huang

ACS nano 14 (11), 14635-14645, 2020
Available at: https://pmc.ncbi.nlm.nih.gov/articles/PMC7688555/
18Acoustic streaming vortices enable contactless, digital control of droplets
P Zhang, C Chen, X Su, J Mai, Y Gu, Z Tian, H Zhu, Z Zhong, H Fu, S Yang, K Chakrabarty, TJ Huang

Science Advances 6 (24), eaba0606, 2020
Available at: https://www.science.org/doi/pdf/10.1126/sciadv.aba0606
17An acoustofluidic device for efficient mixing over a wide range of flow rates
H Bachman, C Chen, J Rufo, S Zhao, S Yang, Z Tian, N Nama, PH Huang, TJ Huang

Lab on a Chip 20 (7), 1238-1248, 2020
Available at: https://pubs.rsc.org/en/content/getauthorversionpdf/c9lc01171d
16Acoustofluidic salivary exosome isolation: a liquid biopsy compatible approach for human papillomavirus–associated oropharyngeal cancer detection
Z Wang, F Li, J Rufo, C Chen, S Yang, L Li, J Zhang, J Cheng, Y Kim, M Wu, E Abemayor, M Tu, D Chia…

The Journal of Molecular Diagnostics 22 (1), 50-59, 2020
Available at: https://www.sciencedirect.com/science/article/pii/S1525157819303952
15Fluorescence-based sorting of Caenorhabditis elegans via acoustofluidics
J Zhang, JH Hartman, C Chen, S Yang, Q Li, Z Tian, PH Huang, L Wang, JN Meyer, TJ Huang

Lab on a Chip 20 (10), 1729-1739, 2020
Available at: https://pubs.rsc.org/en/content/getauthorversionpdf/d0lc00051e
14A disposable acoustofluidic chip for nano/microparticle separation using unidirectional acoustic transducers
S Zhao, M Wu, S Yang, Y Wu, Y Gu, C Chen, J Ye, Z Xie, Z Tian, H Bachman, PH Huang, J Xia, P Zhang…

Lab on a Chip 20 (7), 1298-1308, 2020
Available at: https://pubs.rsc.org/en/content/getauthorversionpdf/d0lc00106f
13Acoustofluidic synthesis of particulate nanomaterials
PH Huang, S Zhao, H Bachman, N Nama, Z Li, C Chen, S Yang, M Wu, SP Zhang, TJ Huang

Advanced Science 6 (19), 1900913, 2019
Available at: https://onlinelibrary.wiley.com/doi/full/10.1002/advs.201900913
12Wave number–spiral acoustic tweezers for dynamic and reconfigurable manipulation of particles and cells
Z Tian, S Yang, PH Huang, Z Wang, P Zhang, Y Gu, H Bachman, C Chen, M Wu, Y Xie, TJ Huang

Science advances 5 (5), eaau6062, 2019
Available at: https://www.science.org/doi/pdf/10.1126/sciadv.aau6062
11Cell lysis via acoustically oscillating sharp edges
Z Wang, PH Huang, C Chen, H Bachman, S Zhao, S Yang, TJ Huang

Lab on a Chip 19 (24), 4021-4032, 2019
Available at: https://pubs.rsc.org/en/content/getauthorversionpdf/c9lc00498j
10Plastic-based acoustofluidic devices for high-throughput, biocompatible platelet separation
Y Gu, C Chen, Z Wang, PH Huang, H Fu, L Wang, M Wu, Y Chen, T Gao, J Gong, J Kwun, GM Arepally…

Lab on a Chip 19 (3), 394-402, 2019
Available at: https://pubs.rsc.org/en/content/getauthorversionpdf/c8lc00527c
9Separating extracellular vesicles and lipoproteins via acoustofluidics
M Wu, C Chen, Z Wang, H Bachman, Y Ouyang, PH Huang, Y Sadovsky, TJ Huang

Lab on a Chip 19 (7), 1174-1182, 2019
Available at: https://pubs.rsc.org/en/content/getauthorversionpdf/c8lc01134f
8Surface acoustic waves enable rotational manipulation of Caenorhabditis elegans
J Zhang, S Yang, C Chen, JH Hartman, PH Huang, L Wang, Z Tian, P Zhang, D Faulkenberry, JN Meyer…

Lab on a Chip 19 (6), 984-992, 2019
Available at: https://pubs.rsc.org/en/content/getauthorversionpdf/c8lc01012a
7Contactless, programmable acoustofluidic manipulation of objects on water
P Zhang, C Chen, F Guo, J Philippe, Y Gu, Z Tian, H Bachman, L Ren, S Yang, Z Zhong, PH Huang, N Katsanis…

Lab on a Chip 19 (20), 3397-3404, 2019
Available at: https://pubs.rsc.org/en/content/getauthorversionpdf/c9lc00465c
6Circulating tumor cell phenotyping via high‐throughput acoustic separation
M Wu, PH Huang, R Zhang, Z Mao, C Chen, G Kemeny, P Li, AV Lee, R Gyanchandani, AJ Armstrong, M Dao…

Small 14 (32), 1801131, 2018
Available at: https://onlinelibrary.wiley.com/doi/am-pdf/10.1002/smll.201801131
5Digital acoustofluidics enables contactless and programmable liquid handling
SP Zhang, J Lata, C Chen, J Mai, F Guo, Z Tian, L Ren, Z Mao, PH Huang, P Li, S Yang, TJ Huang

Nature communications 9 (1), 2928, 2018
Available at: https://www.nature.com/articles/s41467-018-05297-z
4Three-dimensional numerical simulation and experimental investigation of boundary-driven streaming in surface acoustic wave microfluidics
C Chen, SP Zhang, Z Mao, N Nama, Y Gu, PH Huang, Y Jing, X Guo, F Costanzo, TJ Huang

Lab on a Chip 18 (23), 3645-3654, 2018
Available at: https://pubs.rsc.org/en/content/getauthorversionpdf/c8lc00589c
3Isolation of exosomes from whole blood by integrating acoustics and microfluidics
M Wu, Y Ouyang, Z Wang, R Zhang, PH Huang, C Chen, H Li, P Li, D Quinn, M Dao, S Suresh, Y Sadovsky…
Proceedings of the National Academy of Sciences 114 (40), 10584-10589, 2017
Available at: https://www.pnas.org/doi/pdf/10.1073/pnas.1709210114
2Harmonic responses and cavitation activity of encapsulated microbubbles coupled with magnetic nanoparticles
Y Gu, C Chen, J Tu, X Guo, H Wu, D Zhang

Ultrasonics Sonochemistry 29, 309-316, 2016
Available at: https://www.sciencedirect.com/science/article/pii/S1350417715300493
1Microbubble oscillating in a microvessel filled with viscous fluid: A finite element modeling study
C Chen, Y Gu, J Tu, X Guo, D Zhang
Ultrasonics 66, 54-64, 2016
Available at: Link